NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180433_11236751

Scaffold Ga0180433_11236751


Overview

Basic Information
Taxon OID3300018080 Open in IMG/M
Scaffold IDGa0180433_11236751 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012450Metagenome280N
F068775Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0180433_112367511F068775N/AMDKQELKSLVTAFGELITAAAKLDSDKDGKIELTEIFSFVQTLVMKVAAVYGSFSDAIKQFKDVKSAERKELIAAFADSFDLDNKDAEEVIEEWLFVIDDIADA
Ga0180433_112367512F012450N/ADSVIKSSGFAVFVMFAMMSAMAYTLWSQYNNMNERLTKLEREVIECYRENMLHNQGIIERNTKVMEEVLNNLNIK

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