NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187772_10001288

Scaffold Ga0187772_10001288


Overview

Basic Information
Taxon OID3300018085 Open in IMG/M
Scaffold IDGa0187772_10001288 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11802
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0187772_100012885F005268GAGGMSRGDRESEQVWRTLSEAGLVEIRVDEFPERLKEVKRIVTERLLELLDFGASIWERETAAHSLGTLKGLELRLPVISQTPPDLPQK
Ga0187772_100012886F003832AGCAGGMKSAAEQLFTKANWPPQKGQVISFQSSIGAETAVLREVRWGLVWRDFILDDGRVVAEHRVSGCPKPQEWRNLDEITDHEREECEERLFSMAVAGVDPRERDQMFWAELNQYLAYTYLRYKSERSKASDAAR
Ga0187772_100012888F014888AGGAGMNKVLEVLLTVVALAGLYSAISINGSPPANSQIRAEQAVVVADGSDPMPLCRARLCNQ
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