NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187769_10008679

Scaffold Ga0187769_10008679


Overview

Basic Information
Taxon OID3300018086 Open in IMG/M
Scaffold IDGa0187769_10008679 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6397
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021373Metagenome / Metatranscriptome219Y
F040937Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0187769_1000867910F040937N/AGTNCGDGATLNQTCYLVPNSGPGNFGTLQEISPNGLPRVLQFSMRFSF
Ga0187769_100086794F021373AGGAGGMCLPHLRCALLRVDCQILPIFALLLLSAGLLAAQATLAAGPLLLHQVRTIYVAPSADDFVPLIKARLEEWGAIGITSKPEEADAILTCHTETTIVPAKVVVRRTIAEVTLVDRRSQRPIWRTGKSETFDTNRLADDIVEQLKKDFRKSASQY
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