NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187769_10211725

Scaffold Ga0187769_10211725


Overview

Basic Information
Taxon OID3300018086 Open in IMG/M
Scaffold IDGa0187769_10211725 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1436
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187769_102117251F000739GAGMKRLEIWLKGLLAAAVSGGAGGILTGFAAVGIDPQHFNLQAGMGATFRIGAAAALINAVIGVAAYLQKSPLPSE
Ga0187769_102117252F070523AGGAVKRIRIPVLPYERAALHAKLGKILKHGNPAEILLVSSLFFALRPPPRRKRPKKKGQPKRL
Ga0187769_102117253F001367GAGGMPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTILLPYANSAYRKVQRALGNTGGGGFIQDDVLLVVPAVTETDTSLQVSITDATAPPNQLPTDLLVPLKIWERPNGSTDDFLEMVDLTRH
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