NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187771_10000039

Scaffold Ga0187771_10000039


Overview

Basic Information
Taxon OID3300018088 Open in IMG/M
Scaffold IDGa0187771_10000039 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53891
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (75.51%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016370Metagenome / Metatranscriptome247Y
F025789Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0187771_1000003935F016370GGAGMGRRAFRRMVGYVLLLLFPAAMYAADSNPAMLYSNGAAWVNGAHVPRTSTAIFEGDLLQTRFDGVAKINETGSSVTVQPDSLVKFEGASVRIEHGGVAVSTSREMATTAGDVKVKPASTSWTEFNVEDLDGTVHIAALKGDLTITDGKEVMTLAQGQETTRDEKSAEDTDNQDKDHKKHDRRRAGAIAPAEGGILNNPVVVGVGGAAIVATGVLVLIQHGNPASPSKP
Ga0187771_100000395F025789GAGGMRLGIVFGAPVIAALLGVQAFAGPFVVFPGAGQLVSPDGRFVVRNVEREAKAAEFAGNFRSLWLTEIRTGRTRKLCDYVGVAAVAWSGNDSLIVTQYLSQRTSRALIFSVTAAQEPVVVDVPGLVRLVPAELRPALKENDHVFVEASRLEGETLFFRVWGYGKHDADGFRWRCEYNLNSGTVSCSEEHARR
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