Basic Information | |
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Taxon OID | 3300018088 Open in IMG/M |
Scaffold ID | Ga0187771_10001679 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15003 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Colombia: Department of Meta | |||||||
Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
F015771 | Metagenome / Metatranscriptome | 252 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187771_1000167915 | F000624 | GGA | MSPFAIGLLTSFVPVLVQLLLFLRWLHRRMRDDEIIYAFVRDVALNHLPHIYSALQKMAAQQGIVLDETPLVRFLDLDSRAKP |
Ga0187771_1000167916 | F002853 | AGGAGG | MGRAAQNATMNASNQERANIDALNQQFLNQSSQLQNILTPQYQSILNNPGYTPQQQAAITGQSLGALSSAFGSLQQAAQNRAARTRNAAGFGELADELAREKGREAASTTQQNQIAFANNAQQQQMAALQGLSGLYGTNTSLLSRTLGIPAQLLNVNANLAKGGNGFLSSLGSTLGGMLGGLAGGFF |
Ga0187771_1000167919 | F015771 | N/A | ANGWFDIAITDNPNAKPGLFYFAESDTTPAFEHPRVYFLGSSRNLYLQLGNQTLYWRAYSQYIGSATSTPVIFGNPPTPVTGGGSSGPPPLPSAGSGALVNGQVCSGNGFGLLGASRLAKMVP |
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