NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187771_10075478

Scaffold Ga0187771_10075478


Overview

Basic Information
Taxon OID3300018088 Open in IMG/M
Scaffold IDGa0187771_10075478 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2673
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016632Metagenome / Metatranscriptome245Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y
F047437Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0187771_100754782F027079AGGAGGVIKAFLNLCLILFLDMLAYMVAIVAVAAVAWAAVCGAKWSFAVVQNAATALRGRWRKKEMYAHATR
Ga0187771_100754783F016632AGGAGGLTGVLELFALAEIGSAIGFLASWRNKVLKAKVNFFRQPNNKPSRFDKILRGKAGRAVTKQDRLRLQLADHLVNLIRKLVQYDAFRQLVRGLALAHSPMRQALRKKGGRPW
Ga0187771_100754784F047437N/AVRPGSQEFKTLYNEVAKKVEEYSHESGDSVDTLKAKLPALCAIERLAHPDPAVPQGKLGLTLAIIIAAVLGSIGMGALIGLATGMAHWIAHLFA
Ga0187771_100754785F028392AGGAGGMPSMMAVVHLPEALRNGNSALVKLAGKIDSFSLVLQRTTECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASVQLEPGDLGTPPQPKRGRLCRECCFFLGEPEEQLTQTTVGRIPKDLTPQA
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