NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187771_10208449

Scaffold Ga0187771_10208449


Overview

Basic Information
Taxon OID3300018088 Open in IMG/M
Scaffold IDGa0187771_10208449 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1623
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075360Metagenome119N
F088757Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0187771_102084491F075360N/AMLQFERMNRLSGVCLDEEIPITWVDNHVIVAQDLSLAVGLRVQYPDTLFVSSAQADEVHNAFSSMLNQMAVMGDGEARLQFLTICHNQYDELLNDYLLTMPQGNPLLAQFKRDIGQHYREKAASNQLRRYSCYLFIGIEPIVDYSERIKRHRKLSPKDHWIQRVSNFVRDTFELSMDEAANMTEEEWNTAVNVLSKQVQQAQAVLKAAGIQAALMPSDELIETLYWWYNPRSYALGTRPPPFDPTEPKPATSYFVHSQLEVNSKQ
Ga0187771_102084492F088757N/AMSRKQAVKVVALNLPRMLALLTGTRARDWKIRDGPDSGCGIDYYYGHRQGNEAYINVDQGHFTISAAGEPLFKGDPAEHPRLKRCVSEG
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