NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187770_10321893

Scaffold Ga0187770_10321893


Overview

Basic Information
Taxon OID3300018090 Open in IMG/M
Scaffold IDGa0187770_10321893 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023021Metagenome / Metatranscriptome211Y
F036522Metagenome169Y
F074282Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0187770_103218931F036522N/ARLIYDLLGESRGSLGTRKQLTGDLAVRYDNAKIRTAFGLAEMVQITLIVAEDITERVGASLIVDWLLKKLNTKEAQVTKLEIDKVPVELDEGAIKKAVSERLKETRQ
Ga0187770_103218932F023021N/AMFMDKSEAVAVEGWLKKRYKLLFLRINERTNHAFAIVDLPELPLNLSEQPANCRLSLSTPRQAESDFIRMPDFDQGTTFFNSNGWQKRLQQIARN
Ga0187770_103218933F074282N/ALEKDDAIFYALLRMGHECTHAIIPHPHLLSKKIESAWLIEIEHDHNDLGKHGQYTFCYKIVDDPKTA
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