NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187770_10386550

Scaffold Ga0187770_10386550


Overview

Basic Information
Taxon OID3300018090 Open in IMG/M
Scaffold IDGa0187770_10386550 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1098
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011724Metagenome287Y
F062368Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0187770_103865501F062368N/AKDPRKSQTELRATGGSMAVSVSLTEQFIEGTVAGPYIKNAKLTVTGLTTGGNNSVPHGLNDGKGNAVTPISVSIEPSSNNNFYEYQAADSTNIYVGVGSGTGTSCNIYVEY
Ga0187770_103865502F011724GGAGGMSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRSALYARGIDPDAMALTPDQANFLRALNRDGAIADLADALQGNVSLQAGEDAHAAQRRQSFERQVAEIKQGLYDKFFSQLARTVEIEPTLGGTAGGETDRSTAWDRGENKAFSKGQVF
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