Scaffold Ga0181560_10082821

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181560_10082821

Scaffold Ga0181560_10082821

Overview

Basic Information
Taxon OID	3300018413 Open in IMG/M
Scaffold ID	Ga0181560_10082821 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1764
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042289	Metagenome / Metatranscriptome	158	N
F070017	Metagenome	123	N
F074770	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181560_100828213	F042289	AGGTGG	MIDGIFRIEEMPASECPDEFLTRVGNANVTVWRQRLADYDGKLCFSFPYISWCGDMYVAPNEPMAVLVEETWEEAALDIEFDLMKKGLV
Ga0181560_100828214	F070017	AGG	MTCDFCDTPLSDERAEIYSHCPADNCVVMWKRMRLEDFSLTLVPKSGFQIVYKDNEFLKVGGRSSGKVT
Ga0181560_100828215	F074770	GGA	MNADPTGFEDAWADIYWTFAHDDMAFDYRDRYFRERYL

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