NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181560_10092239

Scaffold Ga0181560_10092239


Overview

Basic Information
Taxon OID3300018413 Open in IMG/M
Scaffold IDGa0181560_10092239 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1639
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012206Metagenome / Metatranscriptome282Y
F032262Metagenome / Metatranscriptome180Y
F034158Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0181560_100922393F034158N/AMPERIGRAIGKASKAAQVIAESSGNRLRWSTKNTMGGLIVSTACEQIVINGITWESIALCFVGILPLALSTLEHE
Ga0181560_100922394F032262N/AMNDGYDLLALNLAWLGWEMARWQEVIDWSLSALGAVTLVALNILRLRKALNSQRNVDSRK
Ga0181560_100922395F012206GGALGPQKQPNMSEDKSNIFDFLQQSSSAASDYVKFQDGDKRSLRLLSTPIMGYEVFVDGKPVRWEPDGVRPEHAISDERPKKFVAFVVYEYAGQSDSGRVKVWSFSQRTIIDQMAMLFKEEHWSAFELVVVRQGKGLETKYNVTGIKSPIEDTLLEFAADAKNYIDLKKLYTGDNPFLADLPEVEAKRAKQEPTDLPF
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