NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181559_10073576

Scaffold Ga0181559_10073576


Overview

Basic Information
Taxon OID3300018415 Open in IMG/M
Scaffold IDGa0181559_10073576 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2180
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048120Metagenome / Metatranscriptome148N
F054575Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0181559_100735762F054575N/AMLKIGRFIWENLAAIFIVILFNASTNFLELLIPSFELDGFYSQPAPYLLSVLLFGFYVIPGLLIGTLITNIVFTSHLINYDFLNISLIILFSPLLGIKLMEWTGVANFKTLELQSYRPIVFLVMFSSMLLAGFELLYFLYFNIYLDSYNSFLLKDFLANFFISSFLIYLYLKLPERFHRLVLNK
Ga0181559_100735764F048120N/AMRLDNNLKALYLKTNKFLNCFNLGLFVFVFLLFLYDLKVYASVDVNVTHEYPGETKTHTKRFETIDEASMYVDWMNSGVVQCDPYITSVSIDFNRDFLGQPLPN
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