NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10161303

Scaffold Ga0181553_10161303


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10161303 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1326
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032086Metagenome181Y
F048963Metagenome / Metatranscriptome147N
F099219Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181553_101613032F048963AGGAVNENYAEFEPSDLPLDYSLIDHDEVKRGYDFFWGNNQITGFKMDENGNYVRDQDGNLIAYRTSKQRHQPKSWFNNYYQ
Ga0181553_101613033F099219GAGMNREIPTGLFTRTIHGYDEWLNRYNPYDDEIDEELEEHLEKMREMDNIDAQKDYCDDHHLKYGDIEAWL
Ga0181553_101613034F032086N/AMTDNPTDQYLDMNDLCDQSLEALIQHYLSVQQKLPNNIAVRERLLELEREQFEREKETND
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