NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181553_10295195

Scaffold Ga0181553_10295195


Overview

Basic Information
Taxon OID3300018416 Open in IMG/M
Scaffold IDGa0181553_10295195 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F020115Metagenome / Metatranscriptome226Y
F025729Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0181553_102951952F009699N/AMMMTDKEAQAFMQKVDSSAQFWQELHDENAPTMQIQGNTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGIKGGKQKVADAINAIHAELIGRLKEQNDAEQEQETD
Ga0181553_102951953F020115N/AMTYEQFELLRQWADRVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0181553_102951954F025729N/AMDKSILDRLEYVEETYAGETETWRDPVTGDYYHVPIRIVRDWDDAMNLNDPN
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