NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181558_10060741

Scaffold Ga0181558_10060741


Overview

Basic Information
Taxon OID3300018417 Open in IMG/M
Scaffold IDGa0181558_10060741 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2491
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000896Metagenome / Metatranscriptome845Y
F007531Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0181558_100607413F007531AGGAGMLKKIEKKIESFVRAELAGVHRIDFVHGTLYLTLDKPSLCDFIHKEIRTFYKENINPEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEIMDPTETDDKGIWSEFAEEEMFNNMPDEVDTLLNLQAESKRGK
Ga0181558_100607417F000896GGAGMTNKINMVINLSILALLIYLSISVKTLQDKVFPDPNIMIPLMGYDSSKQELEYNIRTFLNYALEQAIEEQEK
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