NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181558_10198942

Scaffold Ga0181558_10198942


Overview

Basic Information
Taxon OID3300018417 Open in IMG/M
Scaffold IDGa0181558_10198942 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1150
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004086Metagenome / Metatranscriptome454Y
F011113Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0181558_101989421F011113AGCAGGMATEKLKIRLELYATMWDQPPHVEILVAGETKAKQDITGTEDKPD
Ga0181558_101989424F004086N/AFSDIETESYRLAYEIHKDTHTTFGWSFSLPSHITSGTMDLEVAESVNLDGTINYTDINSNLTQGTKEKNIGFYYNKSGEEELDASFNFTAEYRMDKSGVANNDGVEVGMNFVKKFAGSCKFLWMKNPKCFDEDGNMKANLFGKNTDNATKHGLVYDLQTDKFVPIKK

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