Scaffold Ga0181558_10198942

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181558_10198942

Scaffold Ga0181558_10198942

Overview

Basic Information
Taxon OID	3300018417 Open in IMG/M
Scaffold ID	Ga0181558_10198942 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1150
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004086	Metagenome / Metatranscriptome	454	Y
F011113	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181558_101989421	F011113	AGCAGG	MATEKLKIRLELYATMWDQPPHVEILVAGETKAKQDITGTEDKPD
Ga0181558_101989424	F004086	N/A	FSDIETESYRLAYEIHKDTHTTFGWSFSLPSHITSGTMDLEVAESVNLDGTINYTDINSNLTQGTKEKNIGFYYNKSGEEELDASFNFTAEYRMDKSGVANNDGVEVGMNFVKKFAGSCKFLWMKNPKCFDEDGNMKANLFGKNTDNATKHGLVYDLQTDKFVPIKK

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