NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181558_10307486

Scaffold Ga0181558_10307486


Overview

Basic Information
Taxon OID3300018417 Open in IMG/M
Scaffold IDGa0181558_10307486 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0181558_103074862F032639N/AMNKKLINEDGFYAGSELMWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTITYMIEEGQLKTDEQ
Ga0181558_103074863F009699N/ALQPRVLRTRQHSNTLRKMMTDKEAQAFMQKVDSSAQFWQELHDEDAPTMQIQGSTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQNDEQETN

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