NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181558_10672598

Scaffold Ga0181558_10672598


Overview

Basic Information
Taxon OID3300018417 Open in IMG/M
Scaffold IDGa0181558_10672598 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041775Metagenome / Metatranscriptome159Y
F091571Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181558_106725981F041775AGGAGGMRLNDPHHLQVQDLDALEANELAMAFIHDKLIEPMEQNNLLDSDAVSLLNVVGGALKAIAHKAHAYENLYENKTHANHYRN
Ga0181558_106725982F091571N/AMQTITATSKKYLITKSNDGCVIAVRSEDKTHKTDFFIGEATMKKNIDNSTFVRHNHLNYNNEPI

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