NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181563_10133791

Scaffold Ga0181563_10133791


Overview

Basic Information
Taxon OID3300018420 Open in IMG/M
Scaffold IDGa0181563_10133791 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1579
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034503Metagenome174Y
F071155Metagenome / Metatranscriptome122Y
F097199Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181563_101337912F034503GGAGMTKNEAHDLLDRRKQGFAVPLYIVNRALLVSGDIAMACSPCQATRVEGPSMAQGKGTGGLPISFMAGDNSGFNQRNEGTQ
Ga0181563_101337913F097199AGGAMSEALNRVIEEQQKRIDDLLEGNKKLIERSSRVFKQNEELFEAVAKLIDFRMDYDKWEDKQREAYGSLRHEARMQMIEAGYCVTCYNFMVHCECDE
Ga0181563_101337914F071155GAGMRHDIDWKKVHCKVGQRVPVYPFKKEPFIGEVKRIKMNKFGRVSYVIDDKEVMAEELLPAKNQTKLKMRVNQ
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