NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181592_10111433

Scaffold Ga0181592_10111433


Overview

Basic Information
Taxon OID3300018421 Open in IMG/M
Scaffold IDGa0181592_10111433 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2119
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034389Metagenome175Y
F053259Metagenome141N
F076036Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181592_101114333F053259AGGAGMEKQDWINTLNQMQQASAAYSALTKNQRDALTEALNALRSATQSLSEGFDLHLSDCRAIDGAFWRMHHAFEHMEPTEYQLTQLDLHGLEWDYDTQTWHEVEPSDETVDDWEQNPS
Ga0181592_101114334F076036GAGGMTIRPHVTLAVDQTRRKLIEMQEQLNADAWQVIMDDYTHADAMQVQYLDNALELFGKLIDELEGAR
Ga0181592_101114335F034389AGGAMSLYKEAMNIAKEAMENAEGCFDTAQDCIHEMCDGHEISIYYHKAIQFCAGHPTHRGEEWLEDCGGISQEGDTFGMIACRIAFATLYVAAQDALCELQDEAEAVA
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