NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181592_10143076

Scaffold Ga0181592_10143076


Overview

Basic Information
Taxon OID3300018421 Open in IMG/M
Scaffold IDGa0181592_10143076 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F027171Metagenome / Metatranscriptome195N
F088830Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0181592_101430761F001841N/APNFFLGLLRVAAWVFWRDPVAKPEPVQPKRPRKPILGYTVGDIPYELMAVVRIEWYRKGMAYEVEEYQIEECPDAQAQFQYIVGTALRQGADVAVLTQYEPAALGVEE
Ga0181592_101430763F088830N/AMDHTTPIDNLKLSPWYYAVLAAKAVLQQKITEIEEGGIVSPSFYIARLEELEDLEQFLKMSWDQWMESLATRQTAVEESK
Ga0181592_101430764F027171GGAGGVSRVLEIDSLDFDPDGLIRVTAVVDEMVLTHHATQWDPEEYGPALCRGSFYLSDEDLIPATDAELAELLSDRIDDWAPIDPDD
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