Scaffold Ga0181592_10226258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181592_10226258

Scaffold Ga0181592_10226258

Overview

Basic Information
Taxon OID	3300018421 Open in IMG/M
Scaffold ID	Ga0181592_10226258 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1385
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F060047	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181592_102262581	F060047	AGG	MSSTIGDLVDRTFREYLEPADDLNSYTTLTNTDSITGGTGLTAAGTSVTFNGDLLSIEEEDLLDAGTLIEINQELLLCTDLNTVNNTITVVRGARNTTAAEHET
Ga0181592_102262582	F003196	AGG	MRTIGKPALIDISGEASNSLGVKTDGLLLSAIVFPATMTGSNVTLDFSFDGTNWVDVFETDGTEVSYVVSAGNAVRVDPSAWAFASSGYLRVTSDGSEAADRNITLVFRTS

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