NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181592_10410479

Scaffold Ga0181592_10410479


Overview

Basic Information
Taxon OID3300018421 Open in IMG/M
Scaffold IDGa0181592_10410479 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0181592_104104792F024320AGGGGGMTFEEYEQGYYSGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLETLMVELHGREWRDAL
Ga0181592_104104793F023856GGAGGMRCRACDRILEESELTRKDTHGNFLDLCGICLSATANAGVDTETMEYYQYEIFTEDEKYDTLY
Ga0181592_104104794F002858AGGAGMAIDEKSIYLVDGGDYQIYCFGYTQARTVTNDIMKRDPWGGIPFVYEQDQLEVSFDDRGNVVMPRVTLDRILFIASDELPQAESEL
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