NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10002433

Scaffold Ga0190265_10002433


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10002433 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12500
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009441Metagenome318Y
F070283Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_100024336F009441N/AMRPLLIAIAMLLPLPGAATAQRAATPDDFLGLTTCEAGQAITTLRHDVRDSLLVAEIEAHESVHRRQAADHGSCEEFLATLTTARSIIDAELPAYCAQWKVVVARGADSAVTRREFAWRIAAQSGAMENRLQVAQRFEQECR
Ga0190265_100024339F070283AGGAGGMTGRPSVGLSDLEEVSRRIMDGEFSSRPGCTLEVSTYVWNRNELDARHRFEDACEARQIRFAVVDRIGGIEWACP
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