Basic Information | |
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Taxon OID | 3300018422 Open in IMG/M |
Scaffold ID | Ga0190265_10010192 Open in IMG/M |
Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7011 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Utah | |||||||
Coordinates | Lat. (o) | 37.9813 | Long. (o) | -109.5168 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F020982 | Metagenome / Metatranscriptome | 221 | N |
F041239 | Metagenome / Metatranscriptome | 160 | N |
F059736 | Metagenome | 133 | Y |
F073806 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0190265_1001019210 | F059736 | AGGAGG | VSAERLLAPIAIRCAALGGVVLLATVPVYVFVEAPWRPLVARLAVAFVLGVALLQLRAAVAARLVRSGASPLEQALDRPGSPPAIPLRFEELIDDVRATRRSRGHFERIMWPRLTALASRPVAKPPARLGRGPSLAALRRVIADIEGEGEGEGEGKR |
Ga0190265_100101925 | F073806 | N/A | MTYTTEAFVRHSLHRILRSVKYRNSFVCLPCLVTMTLESLHRGWRPSEITRALDRIYAAPGVPMESRAAFRCAHCRNVKPCLGSPYL |
Ga0190265_100101926 | F020982 | AGGA | MARRHFMGSRIYKGLTYTLELEAIEESVFKAHARLSPSGPEVSVVDEASDAALKQAEAGIKHVIEQREAGAVVRERLAERTYGDVKYTIIVRTEATRVVAELYFIRANAQPRRPGPGTFLALFEGKTRQGAIGQAERGLKAKLDKERASHRGGTLR |
Ga0190265_100101927 | F041239 | GGA | MPEPGLGLSALWEERDYKACGGSIECRGRFILSKLFDRDTRMLQAAWLAAFGTRVLGPPEIRTAQITKSQWQVILSRMGASPREIADVQTRMSRA |
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