NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190265_10016686

Scaffold Ga0190265_10016686


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10016686 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5730
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020982Metagenome / Metatranscriptome221N
F041239Metagenome / Metatranscriptome160N
F073806Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_100166862F041239N/AMPDRGLGLSALWEERDYKACGVSMECRGRFILGKLFDRDTPMLKAAWLAAFGTRVLGPPEIRTDEITKAQWQVILSHMGASPDEIADVQIRMGRA
Ga0190265_100166863F020982AGGAMARRHFMGNRTYKGLTYTLELEAIEENVFKAHARLSPSGPEVSIVDETSDAALKQAEAGIRQVIEQREAGAVVRERLPERTYGDVKYTIIVRTEATRVVAELYFIRANAQPRRPGPGIFFALFEGKTKQGAIGQAERGLKAKLDKERAGTTAGRSSR
Ga0190265_100166864F073806N/AMTYSTEDFVRHSLPRILHSVKYRNTFVCLSCLVTMTLERLHPGWRPAEIARALDRVYAAPGVPMESRPAFRCAACRTVKPCLGSPYL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.