NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10030231

Scaffold Ga0190265_10030231


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10030231 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4486
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006926Metagenome / Metatranscriptome362Y
F008920Metagenome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_100302311F006926GAGVSRRASAGRAGRFVCAALLVVAALVPAGCAPLPPARQVTDMNLIAGRWRGQIVFNRGSYQLFYLTINPDGTLIASWDAGTRWGKVTIEGGRARFNFYIWSGTLDYLEGGGDRVILLKEDFSHWDAIVRPLT
Ga0190265_100302313F008920GAGGMIVSFRMRMMGPMLAAAAVAWMLVGAAAHAQPERGTARLDHAAVQGLLTTLGYQPREARNESGPEYEIVLRPPSGLAVTTRVTLSKDGTLVWLVAWLKKVPPGRTINGNAILDMLTENDAIGPTHFSYNESRRWFFLNRPVPNQGLTAERLRTELQQLGAIIARTEALWDFDRWK
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