NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10472548

Scaffold Ga0190265_10472548


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10472548 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1363
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002477Metagenome / Metatranscriptome555Y
F022502Metagenome / Metatranscriptome214Y
F043697Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_104725481F043697N/ATLCAFRGRIDEALMDELIAIQAAAAMEAELVSPAHLVVDTFPCEQGSQRVTDATTL
Ga0190265_104725482F022502N/AMHNLSKVMRSFGRSCRGQGKVFVTLVRQTEQQLLDVGQDIMTLGQQAQACLEKTTTLSETQRERLREDLTTAMRHHEHIRQQSTHLTQGKQLRHWKVVNAYDPTIAPMLKGKSNCPAQCGRKPGIISEPATGFLFAHLTPQGNPSDASSVFP
Ga0190265_104725483F002477N/AVQATARVHHGPKRSLHSLAGDLGVNDPVVRQALHARHILSVGMPKTVEPITPDPSAEEILAILNEANLQRKRTPYHVQLACASGSSRPVVESPIATLLSRGAGTVRYKGLEGAVVQQGMTVMRYNGAVLVRIRQRKITTRAQKFRRLLGLKYPQVSKIN
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