Scaffold Ga0190265_10484686

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190265_10484686

Scaffold Ga0190265_10484686

Overview

Basic Information
Taxon OID	3300018422 Open in IMG/M
Scaffold ID	Ga0190265_10484686 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1347
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	37.9813	Long. (^o)	-109.5168	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000289	Metagenome / Metatranscriptome	1365	Y
F004491	Metagenome / Metatranscriptome	436	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190265_104846861	F004491	N/A	LRIRNEPVEGIQPGQLFHFVVDYDLDGLADVGSTTRMDPPAHAPVATIAQFFLRGTSRGDQFRAEYQKLFDDGIGVALKYLGE
Ga0190265_104846862	F000289	AGGGGG	MLQKFKPLLVAGLLLGALDASAYAAEREDVRKVINLVTSVKMPYPEDLSRNRAKTERVWLERNGTTTGCIVLNERRWCYEHIPPMGNRAEMLRIRNEPSRGIYVGAQYYYIVDFDLEGLVDVGSTTEIDQVDRQPRTLIGEVITFFHRSTNRGEQSQAEYQKMYDEGIQIALKNFGE

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