NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181593_10048962

Scaffold Ga0181593_10048962


Overview

Basic Information
Taxon OID3300018423 Open in IMG/M
Scaffold IDGa0181593_10048962 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3562
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051158Metagenome / Metatranscriptome144N
F086785Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0181593_100489621F086785N/ALSENKVIRRESADNYSWVLIQFFADCRLILCKHGRQWIVQTRSARKPNVGTWVGRKHVTSKAALLVVCSALHLIEDRATAEKVLALPTDARQVAKK
Ga0181593_100489625F051158GGAGMRKFGAIILSLGLTTPVSAADYLCDSFEVAFEFYRSNVALDEFEVAGWRAQPFILRDFPVAPYIETAEEEYDLINVADANSALQGDLYLHQMNTLYQMYEILNPHPITGKFT
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