NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181593_10484522

Scaffold Ga0181593_10484522


Overview

Basic Information
Taxon OID3300018423 Open in IMG/M
Scaffold IDGa0181593_10484522 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)908
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022603Metagenome / Metatranscriptome213Y
F068249Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181593_104845221F068249AGGAGMKYTGTNTTLLAFEASNYDYNVEHNCGGDEAKCYNLTDAQKEALFTVVDKYKFIEGNYESTMIQGVGHAYCDSGIISDAWAVEDVEILGEYLRDTVASTVNKKNKHGIVDETSVFYETEIVHTVGDSIINMHTDGARTHMWHNLFIADMAEALNIDDTETWAEYAWDLESYMYEQRKK
Ga0181593_104845222F022603AGGAGMQVHVLQLQGTGDDEYAYENAAVCANYEDAIERLAEINADYKDVDSAFFVLNENARIETHDLVDNNWGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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