NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181591_10027634

Scaffold Ga0181591_10027634


Overview

Basic Information
Taxon OID3300018424 Open in IMG/M
Scaffold IDGa0181591_10027634 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4848
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017421Metagenome / Metatranscriptome241Y
F031652Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0181591_1002763410F031652N/AMVNLKVHIYGTQYFIDTYATGLRSDCEKFGYHLTVGVVPDAETFSHINHHIHREMVRVVRDAGPDDRILFLDPECRIVRPIPQDWIEDARPILCYKIAEDKHDINRYEYGHTLPGPIQMQPIFLTSRDRDWIQWWYEASMAASDTARNVYVPHELFLELAVKFNKIDIHVEHCVYNRDWQRPQKVVKGSFVTEDTIITHPDIHALLDPNVKHSVNDLNESPFLPSRKLHNHFRDLDTIRRIDELMFKETHDITKWPPNTTIDGEWYVVEDWLFDPRTGRLKHKNFPTIKHHISLADKIRRNIMTPAVKNFKQSNLS
Ga0181591_100276347F017421GAGMYTLEKRKMIYIMTRKPVWYHTHCITPWRGTPLWYDPSWVIGDCELCHMDIESQDWWNGCSYKQSQKRLFDIIELNKKYWV
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