NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181591_10113343

Scaffold Ga0181591_10113343


Overview

Basic Information
Taxon OID3300018424 Open in IMG/M
Scaffold IDGa0181591_10113343 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2205
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031256Metagenome / Metatranscriptome183N
F039823Metagenome / Metatranscriptome163N
F040053Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0181591_101133431F039823N/AVSYWKQSTGRTGQCLSERGQNLFDTLEPIYEEVVGLPLSKMKLYKLSLEMSRGAKADEGFYIQNTATTAFMVLVQDLTSVCRAIRKGKEFNSKSYGSFKVSNLKDLAKSKLGRKRKVA
Ga0181591_101133432F031256AGGMTIPYWQVGIKIGAESGQVNVHSDALPDVSWEYAIEHAMETARAVHPNERIEFLYVKEYN
Ga0181591_101133433F040053AGGAGMKAYFINAKDELIVEVDVKDYHHKLELLNCRMLEVYPYNLNGNDIWVDEEGNLKESNYFAELDVDNEGIANYVISGNALVLSCDDEGNSTDVKDLTIEELKSRIKFHGRRFIEHNGYGFTTRAWEDA
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