NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181591_10205288

Scaffold Ga0181591_10205288


Overview

Basic Information
Taxon OID3300018424 Open in IMG/M
Scaffold IDGa0181591_10205288 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1548
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009955Metagenome310Y
F033412Metagenome177N
F034560Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0181591_102052883F009955GGALQALGQASQDLYRCRYGGREVNAAVEWNSESDIEGGPLSRELRCDEIVIEMLRKAVADFAQDKTQ
Ga0181591_102052884F033412GAGMTAEIDAEFWRVLLAAWGCFAMGVAIWHYRNELHGYGLQPVGRLLLAISPALLSAFGYHSTEAVRTVELMAQAVPVRHVGHEIEPVIADRDTITTPGGATVDYIRTNYGPERRGAGSVRVGDSQFGQRSESSGPGLASVGAGVAGSVPLPLWRP
Ga0181591_102052885F034560N/AMMWENSRKPAGDPMADQNETPQDDDEDGIEWRTLNRTVRVDAATSQKLIDWIGPHLRLIVAAVAWGVFAIATCYAASLVL
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