NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181591_10319072

Scaffold Ga0181591_10319072


Overview

Basic Information
Taxon OID3300018424 Open in IMG/M
Scaffold IDGa0181591_10319072 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F027171Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0181591_103190722F027171GGAGGVSQVLEIDSLEFDPDGLVRVTAVVDQVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELCKLIAERVDDWAPIDPDE
Ga0181591_103190724F001841N/APQIKPPNFFLGLMRVAAWLFWRDPVAKSEPPQPKRPRKPILGYTVGDIPYELMAVVRIEWYRKGVAYEVEEYQIEECPDAREQFHYIVGTALKQGADVAVLTQYEPAALGVEE

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