NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181591_10342188

Scaffold Ga0181591_10342188


Overview

Basic Information
Taxon OID3300018424 Open in IMG/M
Scaffold IDGa0181591_10342188 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025878Metagenome200N
F047990Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0181591_103421881F047990GGAGVTATVVQSGDYTLEIDTGAPVQGFRLDDTLRGVLDGTTFVLDGLTDFADVTDGVKGIRIKRGRRDISDQFGAGTMTFVLDDTAAGGVFNPFATDSPYYDPDNDKPGLAPMRLVRLYRESELLF
Ga0181591_103421882F025878N/AQKQTEDVNEEWAAWNQTLDDGRRAAGNMYPEIDQTAKSVEDLMQEATEAAGAQLELAKSVNAVYDQVKKLNPELVKMLELLDLEDDVEQLRTEFDKYKETLSNTEASTREIEQAQRDLTRSIIETLNAHGLLALAFADQLKIKIDTGDLDAAYASALRVLDAFNKVKQVSAGVTPSTYVPPRDELGFLSAPPVATTTITPVSSITRAPSGAVQNVTVNVSTINPTQEVGEAVVTAIRNYNRTSGSAQIGVGRL
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Institute for Fundamental Biomedical Research
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