NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187903_10890697

Scaffold Ga0187903_10890697


Overview

Basic Information
Taxon OID3300018427 Open in IMG/M
Scaffold IDGa0187903_10890697 Open in IMG/M
Source Dataset NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102214Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0187903_108906971F102214GGAGGMTESEKRALALQIMQQEQQRLASTSFRDHKHAAINDLHRKISTRQQYYDAFAQQGITFREFQLAYNDAYEQGRTDMLAYRFSFFYASTAIAYHEIFSATPDDVATFMKALPKAPEECKNHAELVQRCVAVTGFDPSFADEKKTEPRVTRQDREAVDRMRKTGITKRDLEVEREEGYRD
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