NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181568_10127017

Scaffold Ga0181568_10127017


Overview

Basic Information
Taxon OID3300018428 Open in IMG/M
Scaffold IDGa0181568_10127017 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2135
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040951Metagenome / Metatranscriptome160Y
F044932Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0181568_101270171F044932N/AMQKIKRIITILIVSILTSKVCASTKDIDEERVWDIKNIDNEFIWYRVPGQTVWGHKYGFIKHSSNCDTDNFVVEWSSYEDMKKYEGKIIPLQLENNKGQITRIKPYLRYVNNFTNIMQVGFFTDDQSHTASSRAFDMFNNDSDTVTISIGDEYENFDIKSDTFFTKGLREAKRNAAIKCRKLISNFAVKVV
Ga0181568_101270172F040951AGGMIISFEEPPRRNHFESEEEYQKAFKEWKELFDVMLEKYGNISLT
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