NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190272_10000003

Scaffold Ga0190272_10000003


Overview

Basic Information
Taxon OID3300018429 Open in IMG/M
Scaffold IDGa0190272_10000003 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)258005
Total Scaffold Genes254 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)162 (63.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010196Metagenome / Metatranscriptome307Y
F094358Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0190272_10000003110F094358N/AMLDYDGLQVAYLGVALAHYLDVETGDILDIPLEAEPPGEPERFRRIPTRTPESEDEDRRLFVESLVKGEFAAMRDELAAAVDDHQEFRRILSADRRVERSFFNFKNDQATRAIEAWARDEGLS
Ga0190272_10000003127F010196N/AMAIAVPVTLFFLLGLHRLPQLFTIATVTFLAWGVADLLATILEKPRLQDRSPGKALKEDWDRRSKE

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