NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190272_10000008

Scaffold Ga0190272_10000008


Overview

Basic Information
Taxon OID3300018429 Open in IMG/M
Scaffold IDGa0190272_10000008 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)194854
Total Scaffold Genes175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)95 (54.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.4668Long. (o)-109.6253Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0190272_10000008116F092677N/AMRFSTVPATLLLLFVTACADRGAQPDHQGEWRDVLRHKSAAVAADAKPEHKQLYADSVHAFVQKHPDHKRAREVWQRLQLEFADDLADLGRHQEAIRIYRAVLAHDNANEDASRGLAVAAGRLAVSREKLLELRKGMSERNVASLLGKPMPGWSVKNERPEATFEAWYYRTRGGGVAAVYFREGKVFAAEETAHAKLGRLGS
Ga0190272_10000008119F002548GGCGGMPKFEYESQTETNSAFFERRRLRRVRMIVDLTLNLISSDRTVSHREARCLVDCARKAILELFPGFELRYERIVQPSFDRVLQTRWPEDELRFTDPRDLVN
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