Scaffold Ga0190272_10152389

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190272_10152389

Scaffold Ga0190272_10152389

Overview

Basic Information
Taxon OID	3300018429 Open in IMG/M
Scaffold ID	Ga0190272_10152389 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1594
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.4668	Long. (^o)	-109.6253	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020982	Metagenome / Metatranscriptome	221	N
F073806	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190272_101523894	F073806	N/A	MSYTTEEFVRRSLPRILRSVKYRNTFVCLPCLVAMTLESLHPGWRSSEITRAMDRVYAAPRVPMESRAAFRCAACRSVKPCLGSPYL
Ga0190272_101523895	F020982	AGGGGG	MGGRNRVMARRHFMGNRTYKGLTYTLELEAIEENVFKAHARLSPSGPEVSIVDETSDTALKQAEAGIRQVIEQREAGAVVRERLPERTYGDVKYTIIVRTEATRVVAELYFIRSNAQPRRPGPGTFFALFEGKTKQGAIGQAERGLKAKLDKE

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