Scaffold Ga0066655_10006339

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066655_10006339

Scaffold Ga0066655_10006339

Overview

Basic Information
Taxon OID	3300018431 Open in IMG/M
Scaffold ID	Ga0066655_10006339 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4887
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015499	Metagenome	254	Y
F035918	Metagenome / Metatranscriptome	171	Y
F042036	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_100063391	F035918	N/A	ALWPQLPSDLRTHLADMALLDPNVRYPRETAYETLVSSSSNAEWQQRLTTAPRFIQYIERDVIGNPTTLGKLTF
Ga0066655_100063392	F042036	AGG	MAQKGSQFRAEANPALRTVCAQCGKSIPTEVGHPHPLDAEDRGVWRETWGLVGMENGSPRVFPTCNECYQAGWRPPGFVH
Ga0066655_100063396	F015499	AGG	VGEVIAFEELVRMRRRRVALAVHARCRLILAASVAAARDELVTAPARERLVRLARLRKLEELQEYASALG

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