NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10007107

Scaffold Ga0066655_10007107


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10007107 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4660
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000484Metagenome / Metatranscriptome1088Y
F104936Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100071075F000484GAGGMFGLGLWILASACEPSDPCRSSRMHLRTRYAARYVGHWVVARGDTLTLPQMGDRFKLTNVVLDTARVAVGRDCHFRGTLVFQVPRAETLAVTWLGAPEQALIYGWPAELGPFAGIGAVRVGDSLAGAILFDERLGVRVRPGVTARFIAGRARQ
Ga0066655_100071076F104936GAGGMDGRRVTAYGSMLGVAFGGFTWVVVAGGLIHEPVVSLGGVALGSLVWWFGGRGLLRYPTRPAMVWGVLTLFVVLIDWAVLAYVLPRLPEQGGSIYLGTSRSAYTMLQPILLVCGAAGTALVLWDLLRRR
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