NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10019907

Scaffold Ga0066655_10019907


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10019907 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3106
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003709Metagenome473Y
F005677Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100199071F003709N/AVASVFGPLGKTLHYLADFIAERPQPMRAPDISFFVELLALIICPVGLLLFTISLVLFIRSGRRTAQRV
Ga0066655_100199073F005677N/AMEAESWLAIEGEKSMNRCLAGFLVCSMLVVSGVRASDNWVQLNNAHGWSITYPASWEAYVMQAPDSGPELSIRKSENVNFDGPKDCYERKARCGHFQLYSASSTPQVEVKKYVDEETQNQRIISKEAGQLDGMPAYFIRLPDDQRLVIVKSKSLIFHISYGPNDHKPTDKALEEIFDRMMSSLKFNK
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