NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10028002

Scaffold Ga0066655_10028002


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10028002 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2713
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001681Metagenome / Metatranscriptome652Y
F001901Metagenome / Metatranscriptome620Y
F001906Metagenome / Metatranscriptome619Y

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100280022F001906GAGMTIETNDFQSRLRVLLGLHGAVLTDEELSHTAERYPRCRGKGHWDVREYVRRTGVGAREYRVVRGSGIEDVYRSAERVRAAAIGTALNELESQETSGEAPGGSA
Ga0066655_100280023F001901GAGGMTRKKQSWGQQRGWIVPADGSPPQELPQQMVGHKLISWPGTMPEKQSAEPAKCLASKDYYHRHVLNPEGVSVYVPEGRDAESLPESIKNEIRRQLKGLP
Ga0066655_100280024F001681GGCGGLSGVGSMKTLRLQRDPDGLFLWHPDYAPWIVGRHSRGANPNDRAFFDPTTGEIVWSSRDGMKDYEMDELAARHLVGELVEMPQCESEREVEAWLLERGFKVEWI
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