NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10030960

Scaffold Ga0066655_10030960


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10030960 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2607
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037663Metagenome / Metatranscriptome167N
F046280Metagenome151N
F091738Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100309601F037663GGAGMPRLAALAGQIVEARKPGDILELRAFRPEDIGSDRLVERALRTSADYVASYVMAVAKADPERARLLAEGIEVPWVRPIERPNGHSKAVVEVVRLSEYLTNHALVIGEAAGRTGVRRLVKKKR
Ga0066655_100309602F091738GGTGGVDTESKTPRKVQLIKKRGQPLRRIGFRILGLGAVVSLGIDLVAWLLTREGNLVRIVLGLVLLGSAVVAIGIGLLIDQYDKRKLGI
Ga0066655_100309603F046280AGGGGGMTKYGDFWIKVPKRFQTALRRCRTDQFLVRSGGIADEFHKSVRAYDGSSDDQFREAYVRATEAMAPRLLVPFASMKPTDAAYRDHVEFFQRHLECLRAFGLSDGEIVDAVAAQVCVVLQARGAAP
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