NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10098445

Scaffold Ga0066655_10098445


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10098445 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1634
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037663Metagenome / Metatranscriptome167N
F046280Metagenome151N
F091738Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_100984452F046280GAGGMTKYGDFWVKVPKRLHTALRRCRTDQFLVRSGGGIADEFHKSVREYDGSSDDQFREAYVRATEAMAPRLLVPFASMKPTDAAYRDHVEFFQRHLDCLRAFGLSDGEIVDAVAAQVCEILQVRGAAP
Ga0066655_100984453F091738GGTGGVGVDTASNAPRKVQLIKKRGQPLRRIGFRILGLGAVVSLGIDLVTWLLTREGNPVRIALGLVLLGGAVVAVGIGLLIDQYDKRKLGI
Ga0066655_100984454F037663GGAGMPRLAALAGQIVEARKPGDILELRAFRPEDIGSDRLVERALRTSADYVASYVIAVARADPERARLLAEGIEVPWVRPIERPNGHSKAVVEVVRLSEYLTNHALVIGEAAGRTGVQRLVKKKR
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