NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066655_10176236

Scaffold Ga0066655_10176236


Overview

Basic Information
Taxon OID3300018431 Open in IMG/M
Scaffold IDGa0066655_10176236 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012007Metagenome284Y
F086886Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0066655_101762361F086886N/ATLTNLESPTTNTQSVKIPIAANQDGSLTYYLVEMRAKIGTYDQYLPFPSDYPGAGILIYKVNESIAAGHGSVRLVDAHPGGDLNDAPFGPCNSPCVSDNTFSDQANFVKVIVTTTSLTSYSVLVDRTSAPRLLLQINTPSQGVSVTIDGANWTSDASNQLRLPVRYGPHTIFIQPQIPVSVGSTTIQLGLTESFAAWDDGSTSNPRWVSVVEDSVLTASYRVVIEPSFATAITAATILGVVVLAVTFHRRRHQALGSAKGSATYSSPEPSVTQLGNPSSPTGSFPGNDAFSGVPVDNNNEPKGS
Ga0066655_101762362F012007N/AGFPIQAGALVGQPRNISTFSGMNNELRANVTVFESGAGASTLHFELLAMNDSQSCSPSSHPPTVLVDQTVANKSFNIPLKASGTYCFVFDNQGPQPSKTVNISARVLGSTEKVLIARDGSANTVGLGLGALGLVVVIYGYSRKSIIPWE
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Institute for Fundamental Biomedical Research
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