Scaffold Ga0190275_10000114

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190275_10000114

Scaffold Ga0190275_10000114

Overview

Basic Information
Taxon OID	3300018432 Open in IMG/M
Scaffold ID	Ga0190275_10000114 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	94870
Total Scaffold Genes	118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	82 (69.49%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Montana
Coordinates	Lat. (^o)	45.2639	Long. (^o)	-110.8632	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190275_1000011447	F081191	AGGAG	VEAIVALADDGFCRRGELVRRFPKLGARDLHRTLRRAVAQGLVIERRGPDGAFHLAVSSEGWNRHRNG
Ga0190275_1000011449	F016854	GAG	MASQNVKHVKSPPQPGEVWLSCPPYLMLARIVEVDLGSEPPVVSYELHDDDGSLLQAVEHATLDRGWWRTYQRLEPRFG
Ga0190275_1000011482	F031439	AGG	MYFIPLALILLIALVAVAWSPIFALIIFVVGFVGFLAFAGMNRRADEKLAPPEQPGRQPQHENETPTGIWGEKRPS

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